Challenges of RAG and How to Solve Them Using Advanced Strategies

Muhammad HamdanMuhammad Hamdan
4 min read

Retrieval-Augmented Generation (RAG) enhances the accuracy of AI responses by retrieving relevant information from external knowledge sources. But building an effective RAG pipeline isn’t as easy as it sounds. From poor retrieval quality to slow search times on massive datasets, developers face several challenges when implementing RAG in real-world applications.

In this blog, we’ll break down the key challenges of RAG and walk through advanced strategies to overcome them complete with practical examples and tools you can use.


1. Poor Retrieval Quality

The Problem
Your RAG system may retrieve irrelevant or overly generic chunks, resulting in vague or incorrect answers.

Example

  • User query: “How does photosynthesis work?”

  • Retrieved chunk: “Plants need sunlight to grow.” (Too general, not helpful)

Solutions

A. Optimize Chunk Size
The size of each text chunk has a major impact on the quality of retrieval:

  • Small chunks (256–512 tokens) are more precise, ideal for direct Q&A.

  • Medium chunks (512–768 tokens) work well for Q&A and summarization.

  • Large chunks (1024+ tokens) offer more context but may introduce noise.

Example
For a Q&A system:

  • Use a small chunk like: “Photosynthesis converts sunlight into glucose using chlorophyll.”

For summarization:

  • Combine adjacent chunks to provide better overall context.

B. Use Hybrid Search (Vector + Keyword)
Combining semantic (vector) search with keyword search improves both relevance and precision.

Example
Query: “Python libraries for data visualization”

  • Keyword search may retrieve "Matplotlib", "Seaborn"

  • Vector search may retrieve content discussing “best plotting tools in Python”

Recommended Tools: Weaviate, Pinecone


2. Handling Complex or Vague Queries

The Problem
Users often submit overly broad or unclear queries, making it difficult to retrieve meaningful results.

Example

  • User query: “Tell me about AI” (Too vague to retrieve specific information)

Solutions

A. Query Expansion or Rewriting
Use large language models to rephrase queries before retrieval.

Example

  • Original query: “Tell me about AI”

  • Rewritten query: Explain artificial intelligence, including machine learning and deep learning, with examples.”

B. Hierarchical Retrieval
Break down retrieval into two steps:

  1. Coarse retrieval (e.g., using keyword search) to get a broad set of potentially relevant chunks

  2. Fine retrieval (e.g., cross-encoder re-ranking) to refine the top results

Example

  • Use BM25 to get 100 candidate chunks

  • Use vector similarity and reranking to pick the top 3 most relevant ones

Recommended Tools: Elasticsearch + FAISS, Cohere Rerank


3. Summarizing Large Documents

The Problem
Even large-context LLMs (like GPT-4) can’t handle full-length books or research papers in one go due to token limits.

Example
A 100-page research paper exceeds even the largest token windows available today.

Solution: Map-Reduce Summarization

Map phase: Split the document into smaller sections and summarize each
Reduce phase: Combine these summaries into a final, concise output

Example
For a 10-page climate report:

  • Section 1: “CO2 emissions are rising.”

  • Section 2: “Arctic ice is melting faster.”

  • Final Summary: “Climate change is accelerating due to CO2 emissions, leading to Arctic ice loss.”

Recommended Tool: LangChain’s MapReduceDocumentsChain


4. Irrelevant Chunks in Top Results

The Problem
Semantic similarity doesn’t always mean relevance. Systems might retrieve chunks that are topically related but not useful for the query.

Example

  • Query: “Impact of electric cars on the environment”

  • Retrieved: “History of electric vehicles” (related, but not relevant)

Solution: Use Reranking
Apply a cross-encoder model to rerank retrieved chunks based on contextual relevance.

Example
Initial retrieved results:

  1. “History of electric cars”

  2. “Battery recycling challenges”

  3. “Electric cars reduce CO2 emissions”

After reranking:

  1. “Electric cars reduce CO2 emissions” (Most relevant)

  2. “Battery recycling challenges”

  3. “History of electric cars”

Recommended Tools: Cohere Rerank, Sentence-Transformers Cross-Encoder


5. Scaling to Large Datasets

The Problem
Searching over millions of chunks can be slow, expensive, and resource-intensive.

Solutions

A. Metadata Filtering
Filter documents using metadata (e.g., year, author, topic) before performing vector search.

Example

  • Query: “Latest COVID research”

  • Filter: {"year": 2023, "topic": "virology"}

  • Then perform semantic search on the filtered subset

B. Use Approximate Nearest Neighbor (ANN) Indexing
ANN algorithms like HNSW or IVF speed up vector search drastically.

Example

  • Without ANN: ~10 seconds per search over 1M chunks

  • With ANN: ~0.1 seconds

Recommended Tools: FAISS, Pinecone, Weaviate


Summary: Matching Challenges to Strategies

ChallengeRecommended StrategyExample
Poor retrieval qualityHybrid search + optimized chunkingUse smaller chunks for precise Q&A
Vague queriesQuery rewriting + hierarchical retrievalRewrite “Tell me about AI” to be more specific
Long documentsMap-reduce summarizationSummarize each section, then combine
Irrelevant resultsReranking with cross-encodersUse bge-reranker to reorder top results
Scaling issuesANN indexing + metadata filteringFilter by tags, then perform fast search

Conclusion

Retrieval-Augmented Generation is a powerful architecture but to fully unlock its potential, it's essential to handle retrieval thoughtfully. By:

  • Optimizing chunk size

  • Rewriting vague queries

  • Using hybrid search methods

  • Applying reranking models

  • Scaling smartly with ANN and metadata filtering

you can build an intelligent and scalable RAG system that delivers high-quality, relevant, and efficient responses.

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Written by

Muhammad Hamdan
Muhammad Hamdan

I am a MEAN Stack Developer with expertise in SQL, AWS, and Docker, and over 2 years of professional experience as a Software Engineer, building scalable and efficient solutions.