Challenges of RAG and How to Solve Them Using Advanced Strategies

Retrieval-Augmented Generation (RAG) enhances the accuracy of AI responses by retrieving relevant information from external knowledge sources. But building an effective RAG pipeline isn’t as easy as it sounds. From poor retrieval quality to slow search times on massive datasets, developers face several challenges when implementing RAG in real-world applications.
In this blog, we’ll break down the key challenges of RAG and walk through advanced strategies to overcome them complete with practical examples and tools you can use.
1. Poor Retrieval Quality
The Problem
Your RAG system may retrieve irrelevant or overly generic chunks, resulting in vague or incorrect answers.
Example
User query: “How does photosynthesis work?”
Retrieved chunk: “Plants need sunlight to grow.” (Too general, not helpful)
Solutions
A. Optimize Chunk Size
The size of each text chunk has a major impact on the quality of retrieval:
Small chunks (256–512 tokens) are more precise, ideal for direct Q&A.
Medium chunks (512–768 tokens) work well for Q&A and summarization.
Large chunks (1024+ tokens) offer more context but may introduce noise.
Example
For a Q&A system:
- Use a small chunk like: “Photosynthesis converts sunlight into glucose using chlorophyll.”
For summarization:
- Combine adjacent chunks to provide better overall context.
B. Use Hybrid Search (Vector + Keyword)
Combining semantic (vector) search with keyword search improves both relevance and precision.
Example
Query: “Python libraries for data visualization”
Keyword search may retrieve "Matplotlib", "Seaborn"
Vector search may retrieve content discussing “best plotting tools in Python”
Recommended Tools: Weaviate, Pinecone
2. Handling Complex or Vague Queries
The Problem
Users often submit overly broad or unclear queries, making it difficult to retrieve meaningful results.
Example
- User query: “Tell me about AI” (Too vague to retrieve specific information)
Solutions
A. Query Expansion or Rewriting
Use large language models to rephrase queries before retrieval.
Example
Original query: “Tell me about AI”
Rewritten query: “Explain artificial intelligence, including machine learning and deep learning, with examples.”
B. Hierarchical Retrieval
Break down retrieval into two steps:
Coarse retrieval (e.g., using keyword search) to get a broad set of potentially relevant chunks
Fine retrieval (e.g., cross-encoder re-ranking) to refine the top results
Example
Use BM25 to get 100 candidate chunks
Use vector similarity and reranking to pick the top 3 most relevant ones
Recommended Tools: Elasticsearch + FAISS, Cohere Rerank
3. Summarizing Large Documents
The Problem
Even large-context LLMs (like GPT-4) can’t handle full-length books or research papers in one go due to token limits.
Example
A 100-page research paper exceeds even the largest token windows available today.
Solution: Map-Reduce Summarization
Map phase: Split the document into smaller sections and summarize each
Reduce phase: Combine these summaries into a final, concise output
Example
For a 10-page climate report:
Section 1: “CO2 emissions are rising.”
Section 2: “Arctic ice is melting faster.”
Final Summary: “Climate change is accelerating due to CO2 emissions, leading to Arctic ice loss.”
Recommended Tool: LangChain’s MapReduceDocumentsChain
4. Irrelevant Chunks in Top Results
The Problem
Semantic similarity doesn’t always mean relevance. Systems might retrieve chunks that are topically related but not useful for the query.
Example
Query: “Impact of electric cars on the environment”
Retrieved: “History of electric vehicles” (related, but not relevant)
Solution: Use Reranking
Apply a cross-encoder model to rerank retrieved chunks based on contextual relevance.
Example
Initial retrieved results:
“History of electric cars”
“Battery recycling challenges”
“Electric cars reduce CO2 emissions”
After reranking:
“Electric cars reduce CO2 emissions” (Most relevant)
“Battery recycling challenges”
“History of electric cars”
Recommended Tools: Cohere Rerank, Sentence-Transformers Cross-Encoder
5. Scaling to Large Datasets
The Problem
Searching over millions of chunks can be slow, expensive, and resource-intensive.
Solutions
A. Metadata Filtering
Filter documents using metadata (e.g., year, author, topic) before performing vector search.
Example
Query: “Latest COVID research”
Filter: {"year": 2023, "topic": "virology"}
Then perform semantic search on the filtered subset
B. Use Approximate Nearest Neighbor (ANN) Indexing
ANN algorithms like HNSW or IVF speed up vector search drastically.
Example
Without ANN: ~10 seconds per search over 1M chunks
With ANN: ~0.1 seconds
Recommended Tools: FAISS, Pinecone, Weaviate
Summary: Matching Challenges to Strategies
Challenge | Recommended Strategy | Example |
Poor retrieval quality | Hybrid search + optimized chunking | Use smaller chunks for precise Q&A |
Vague queries | Query rewriting + hierarchical retrieval | Rewrite “Tell me about AI” to be more specific |
Long documents | Map-reduce summarization | Summarize each section, then combine |
Irrelevant results | Reranking with cross-encoders | Use bge-reranker to reorder top results |
Scaling issues | ANN indexing + metadata filtering | Filter by tags, then perform fast search |
Conclusion
Retrieval-Augmented Generation is a powerful architecture but to fully unlock its potential, it's essential to handle retrieval thoughtfully. By:
Optimizing chunk size
Rewriting vague queries
Using hybrid search methods
Applying reranking models
Scaling smartly with ANN and metadata filtering
you can build an intelligent and scalable RAG system that delivers high-quality, relevant, and efficient responses.
Subscribe to my newsletter
Read articles from Muhammad Hamdan directly inside your inbox. Subscribe to the newsletter, and don't miss out.
Written by

Muhammad Hamdan
Muhammad Hamdan
I am a MEAN Stack Developer with expertise in SQL, AWS, and Docker, and over 2 years of professional experience as a Software Engineer, building scalable and efficient solutions.